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Javier Santoyo, 05/31/2010 10:26 am

Home >> Functional profiling documentation

SNOW output

Statistic results

  • Interactome parameters

Boxplots of List distributions for the genes/proteins parameters mapped into the interactome versus whole parameters distributions in the interactome. P-values are for the Kolmogorov-Smirnov test.

  • Network parameters

Boxplots of List and random distributions for the Minimal Connected Networks generated from lists. P-values are for the Kolmogorov-Smirnov test.

Minimal Connected Network visualization

Users may view the network generated through a user friendly window that allows to manipulated the network and obtain functional information interactively.

Nodes belonging to the same component are colored with same color. The color-intensity of the nodes within each component means the centrality of the node within the complete MCN. Higher intensity corrspond to higher betweenness centrality.
The size of the nodes mean nothing, it is just a matter of visualization due to label-lenght variability.

The applet has several options to facilitate the exploration of the MCN, some examples are the posibility of hiding nodes or edges that can be restored afterwards (show/hide nodes/edges option), gene/protein names can be shown or hidden, the dynamical layout can be switched off to move the nodes as we more like, etc. Here is the legend (under info bottom) with some help on visualization.

Network functional information

Set of tables to obtain the maximum of information about minimal connected network functionality.
Functional information about proteins/genes in the list, and also about the ones introduced by Snow.
Shortests paths within the network
Components, bicomponents and articulation points functional information.