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- Tutorials for end users
- Technical information for developers
- Roadmap for the new features we are working in
- Some known issues and planned enhancements
- Many documents and files of publications and releases
- Some courses that are going to be held
Genes operate within an intricate network of interactions that we have only recently started to envisage. Many higher-order levels of interaction are continuously being discovered.
We are interested in developing methods and tools which can help to understand large-scale experiments from a systems biology perspective. From the last years w
- Babelomics: ...
- Pupasuite: ...
- Infrared: ...
- Labs: the projects that are being developed at this moment.
You can also browse all our projects in here
Latest news
Babelomics:
Babelomics 4 at the top 5% of NAR papers
We are pleased to inform that Babelomics 4 has been chosen by the Editors of Nucleic Acids Research to appear on their Featured Articles page
Babelomics:
Babelomics 4.0.1 released
A maintenance bug fix release of Babelomics 4
Babelomics:
VI International Course of Massive Data Analysis
6th Edition of the MDA course in CIPF (Valencia)
Babelomics:
Babelomics 4.0 release!
GEPAS suite has been merged in this new release of Babelomics with many new features and improvements
Latest projects
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CellBase (12/31/2011 08:44 pm)
During the last years the advances of high-throughput technologies have produced an unprecedented growth of repositories and databases storing relevant biological data. Today there is more biological information than ever but unfortunately the current status of many of these repositories is far from being optimal most of the times. Some of the most common problems are: a) information is spread out in many small repositories and databases, b) lack of standards between different repositories, c) unsupported databases, d) specific and unconnected information, etc. All these problems make very difficult: a) to integrate or join many different sources into only one database to work or analyze experiments; b) to access and query this information in programmatically way....
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Variant (12/30/2011 05:47 pm)
VARIANT (VARIant ANalysis Tool) can report the functional properties of any variant in all the human, mouse or rat genes (and soon new model organisms will be added) and the corresponding neighborhoods. Also other non-coding extra-genic regions, such as miRNAs are included in the analysis....
- NGS-GPU pipeline (10/21/2011 09:48 am)
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Genome Maps (09/20/2011 08:00 am)
Genome browsers are extremely useful to represent genomic data, such as SNPs, gene expression, methylation, etc., on the genomic context. Different genome browsers on the web are available, being the most popular the Ensembl and the UCSC. However, with the continuous increase in the available genomic data and metadata along with the limitations derived from extensive data traffic imposed by client/server architecture, such browsers become inevitably slower. Genome Maps is based on the new HTML5 standards, including SVG and Javascript and runs 100% in the in the modern web browsers (in a philosophy similar to Google). This makes unnecessary the installation of any Flash plug-in, Java Applet or any other technology and results in a fast and dynamic response to user requests. Genome Maps allows real-time navigation along chromosomes and karyotypes, representing different types of data over many types of genomic information. There are numerous pre-configured tracks such as genes, transcripts, SNPs, mutations, miRNA targets, conserved regions, TFBS, etc. There are also several DAS sources available, but new ones can easily be added to the system....
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BWT-GPU (05/11/2011 09:38 am)
New high-throughput sequencers are able to produce data at an unprecedented scale while sequencing costs are in free fall. Primary data processing, which often includes mapping short reads onto a reference genome, is computationally very expensive. Recently, a variety of programs, many of them implementing Burrows-Wheeler Transform (BWT), have been developed for such task. Despite the efficiency of BWT the general view is that other solutions will be necessary to cope with the soon to come flood of sequencing data....